Centre for Cell ImagingCCI

Image Analysis Suite


The Image Analysis Suite in the CCI comprises several desktop computers that have a range of specialist software installed which are maintained by the Technical Specialist in Image Analysis.

The workstations can be booked through the same booking system as the microscopes, BookIt-lab. You can view the schedule at:

(login required to make bookings)

The table below gives an overview over the software installed on the Image Analysis Workstations. If you are unsure which machine to use, please refer to the recommended use section at the bottom or have a chat with the CCI Technical Specialist in Image Analysis.

Image Analysis Workstations


To find which workstation runs a specific software, type the software name in the Search field:



"Rosalind" Franklin "Lise" Meitner "Nettie" Stevens "Alice" Ball "Ada" Lovelace
Software
Imaris 9.9.0
&
Imaris file converter
Imaris 9.9.0
&
Imaris file converter
Imaris Viewer
&
Imaris file converter
Imaris Viewer
&
Imaris file converter
Zen blue 3.2
&
Zen black 3.0
Zen blue 2.1
&
Zen black 2.1
Zen blue 2.1
&
Zen black 2.1
Fiji Fiji Fiji Fiji Fiji
Ilastik Ilastik Ilastik
Knime Knime
Matlab 2019a Matlab 2020a Matlab 2019a
Cell Profiler
Icy
Symphotime
Notepad++ Notepad++ Notepad++ Notepad++ Notepad++
Omero.insight Omero.insight Omero.insight Omero.insight Omero.insight
Inkscape Inkscape Inkscape Inkscape Inkscape
RStudio
Recommended Use
  • Imaris: files > 3 GB
  • Fiji: processing of large image files including lightsheet data
  • Imaris: files > 3 GB
  • Fiji: processing of large image files including lightsheet data
  • Imaris Viewer: generate high-resolution snapshots, inspect images
  • Fiji: processing of medium-sized image files up to 20 GB
  • Imaris Viewer: generate high-resolution snapshots, inspect images
  • Fiji: processing of medium-sized image files up to 15 GB
  • Matlab, R: Number processing
  • Omero.insight: file uploading
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